Genomes of 13 domesticated and wild rice relatives highlight genetic conservation, turnover and innovation across the genus Oryza

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cg.identifier.doihttps://doi.org/10.1038/s41588-018-0040-0en
cg.issn1061-4036en
cg.issue2en
cg.journalNature Geneticsen
cg.volume50en
dc.contributor.authorStein, Joshua C.en
dc.contributor.authorYu, Yeisooen
dc.contributor.authorCopetti, Darioen
dc.contributor.authorZwickl, Derrick J.en
dc.contributor.authorZhang, Lien
dc.contributor.authorZhang, Chengjunen
dc.contributor.authorChougule, Kapeelen
dc.contributor.authorGao, Dongyingen
dc.contributor.authorIwata, Aikoen
dc.contributor.authorGoicoechea, Jose Luisen
dc.contributor.authorWei, Sharonen
dc.contributor.authorWang, Junen
dc.contributor.authorLiao, Yien
dc.contributor.authorWang, Muhuaen
dc.contributor.authorJacquemin, Julieen
dc.contributor.authorBecker, Claudeen
dc.contributor.authorKudrna, Daveen
dc.contributor.authorZhang, Jianweien
dc.contributor.authorLondono, Carlos E. M.en
dc.contributor.authorSong, Xiangen
dc.contributor.authorLee, Seungheeen
dc.contributor.authorSanchez, Paulen
dc.contributor.authorZuccolo, Andreaen
dc.contributor.authorAmmiraju, Jetty S. S.en
dc.contributor.authorTalag, Jaysonen
dc.contributor.authorDanowitz, Annen
dc.contributor.authorRivera, Luis F.en
dc.contributor.authorGschwend, Andrea R.en
dc.contributor.authorNoutsos, Christosen
dc.contributor.authorWu, Cheng-chiehen
dc.contributor.authorKao, Shu-Minen
dc.contributor.authorZeng, Jhih-wunen
dc.contributor.authorWei, Fu-Jinen
dc.contributor.authorZhao, Qiangen
dc.contributor.authorFeng, Qien
dc.contributor.authorEl Baidouri, Moaineen
dc.contributor.authorCarpentier, Marie-Christineen
dc.contributor.authorLasserre, Ericen
dc.contributor.authorCooke, Richarden
dc.contributor.authorRosa Farias, Daniel daen
dc.contributor.authorda Maia, Luciano Carlosen
dc.contributor.authordos Santos, Railson S.en
dc.contributor.authorNyberg, Kevin G.en
dc.contributor.authorMcNally, Kenneth L.en
dc.contributor.authorMauleon, Ramilen
dc.contributor.authorAlexandrov, Nickolaien
dc.contributor.authorSchmutz, Jeremyen
dc.contributor.authorFlowers, Daveen
dc.contributor.authorFan, Chuanzhuen
dc.contributor.authorWeigel, Detlefen
dc.contributor.authorJena, Kshirod K.en
dc.contributor.authorWicker, Thomasen
dc.contributor.authorChen, Mingshengen
dc.contributor.authorHan, Binen
dc.contributor.authorHenry, Roberten
dc.contributor.authorHsing, Yue-ie C.en
dc.contributor.authorKurata, Norien
dc.contributor.authorde Oliveira, Antonio Costaen
dc.contributor.authorPanaud, Olivieren
dc.contributor.authorJackson, Scott A.en
dc.contributor.authorMachado, Carlos A.en
dc.contributor.authorSanderson, Michael J.en
dc.contributor.authorLong, Manyuanen
dc.contributor.authorWare, Doreenen
dc.contributor.authorWing, Rod A.en
dc.date.accessioned2024-12-19T12:54:27Zen
dc.date.available2024-12-19T12:54:27Zen
dc.identifier.urihttps://hdl.handle.net/10568/164912
dc.titleGenomes of 13 domesticated and wild rice relatives highlight genetic conservation, turnover and innovation across the genus Oryzaen
dcterms.abstractThe genus Oryza is a model system for the study of molecular evolution over time scales ranging from a few thousand to 15 million years. Using 13 reference genomes spanning the Oryza species tree, we show that despite few large-scale chromosomal rearrangements rapid species diversification is mirrored by lineage-specific emergence and turnover of many novel elements, including transposons, and potential new coding and noncoding genes. Our study resolves controversial areas of the Oryza phylogeny, showing a complex history of introgression among different chromosomes in the young ‘AA’ subclade containing the two domesticated species. This study highlights the prevalence of functionally coupled disease resistance genes and identifies many new haplotypes of potential use for future crop protection. Finally, this study marks a milestone in modern rice research with the release of a complete long-read assembly of IR 8 ‘Miracle Rice’, which relieved famine and drove the Green Revolution in Asia 50 years agoen
dcterms.accessRightsOpen Access
dcterms.available2018-01-22
dcterms.bibliographicCitationStein, Joshua C.; Yu, Yeisoo; Copetti, Dario; Zwickl, Derrick J.; Zhang, Li; Zhang, Chengjun; Chougule, Kapeel; Gao, Dongying; Iwata, Aiko; Goicoechea, Jose Luis; Wei, Sharon; Wang, Jun; Liao, Yi; Wang, Muhua; Jacquemin, Julie; Becker, Claude; Kudrna, Dave; Zhang, Jianwei; Londono, Carlos E. M.; Song, Xiang; Lee, Seunghee; Sanchez, Paul; Zuccolo, Andrea; Ammiraju, Jetty S. S.; Talag, Jayson; Danowitz, Ann; Rivera, Luis F.; Gschwend, Andrea R.; Noutsos, Christos; Wu, Cheng-chieh; Kao, Shu-min; Zeng, Jhih-wun; Wei, Fu-jin; Zhao, Qiang; Feng, Qi; El Baidouri, Moaine; Carpentier, Marie-Christine; Lasserre, Eric; Cooke, Richard; Rosa Farias, Daniel da; da Maia, Luciano Carlos; dos Santos, Railson S.; Nyberg, Kevin G.; McNally, Kenneth L.; Mauleon, Ramil; Alexandrov, Nickolai; Schmutz, Jeremy; Flowers, Dave; Fan, Chuanzhu; Weigel, Detlef; Jena, Kshirod K.; Wicker, Thomas; Chen, Mingsheng; Han, Bin; Henry, Robert; Hsing, Yue-ie C.; Kurata, Nori; de Oliveira, Antonio Costa; Panaud, Olivier; Jackson, Scott A.; Machado, Carlos A.; Sanderson, Michael J.; Long, Manyuan; Ware, Doreen and Wing, Rod A. 2018. Genomes of 13 domesticated and wild rice relatives highlight genetic conservation, turnover and innovation across the genus Oryza. Nat Genet, Volume 50 no. 2 p. 285-296en
dcterms.extentpp. 285-296en
dcterms.issued2018-02
dcterms.languageen
dcterms.licenseCC-BY-4.0
dcterms.publisherSpringeren
dcterms.typeJournal Article

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