Replication Data for: Genetic mapping for agronomic traits in a MAGIC population of common bean (Phaseolus vulgaris L.) under drought conditions

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cg.contributor.affiliationInternational Center for Tropical Agricultureen
cg.creator.identifierDaniel Ariza-Suarez: 0000-0002-1871-3514
cg.creator.identifierJuan F. De la Hoz: 0000-0002-5584-7511
cg.creator.identifierJorge Duitama: 0000-0002-9105-6266
cg.creator.identifierPaulo Izquierdo: 0000-0002-2153-0655
cg.creator.identifierStephen E Beebe: 0000-0002-3742-9930
cg.creator.identifierbodo raatz: 0000-0003-0556-0691
cg.identifier.doihttps://doi.org/10.7910/dvn/jr4x4cen
cg.subject.ciatBEANSen
dc.contributor.authorDíaz, Santiagoen
dc.contributor.authorAriza-Suárez, Danielen
dc.contributor.authorIzquierdo, Pauloen
dc.contributor.authorLobaton, Juan Daviden
dc.contributor.authorHoz, Juan Fernando de laen
dc.contributor.authorAcevedo, Fernandoen
dc.contributor.authorDuitama, Jorgeen
dc.contributor.authorGuerrero, Alberto F.en
dc.contributor.authorCajiao V., César Hernandoen
dc.contributor.authorMayor, Victoren
dc.contributor.authorBeebe, Stephen E.en
dc.contributor.authorRaatz, Bodoen
dc.date.accessioned2019-07-16T14:21:39Zen
dc.date.available2019-07-16T14:21:39Zen
dc.identifier.urihttps://hdl.handle.net/10568/102198
dc.titleReplication Data for: Genetic mapping for agronomic traits in a MAGIC population of common bean (Phaseolus vulgaris L.) under drought conditionsen
dcterms.abstractThese datasets contain phenotypic and genotypic data of a MAGIC (Multiparent Advanced Generation Inter-Crosses) population of common bean (Phaseolus vulgaris L.), developed by inter-crossing of eight Mesoamerican elite breeding lines. The main goal for this population is to be used for applications in breeding and breeding tool development, which will support efforts to develop climate resilient germplasm, as well as information for basic research questions aiming to uncover the genetic basis of important agronomic traits. The raw phenotypic data come from three different trials carried out in Palmira (Colombia). Two replicated trials were laid out in the field with an alpha-lattice experimental design in 2013 and 2014, and an additional non-replicated trial in 2016. Several agronomic traits were assessed, including Days to Flowering (DF), Days to Physiological Maturity (DPM), 100 seed weight (100SdW), Yield (Yd), Pod Harvest Index (PHI), Iron and Zinc content (SdFe and SdZn). The agronomic performance of the population was modeled using linear mixed models with spatial correction. From these models, best linear unbiased estimators / predictors were obtained (BLUEs/BLUPs). The genotypic datasets include a variant call format (VCF) file of 20,615 GBS variants genotyped for 629 RILs (recombinant inbred lines) and 8 founder. From this matrix, a large and dense genetic map was obtained. This map accounts for multiple recombination events from multiple founder lines using SNP data, conferring higher accuracy due to the large population size. It makes it suitable for analyzing the linkage and segregation patterns for genetic mapping in the species Phaseolus vulgaris.en
dcterms.accessRightsOpen Access
dcterms.bibliographicCitationDiaz, Santiago; Ariza-Suarez, Daniel; Izquierdo, Paulo; Lobaton, Juan David; de la Hoz, Juan; Acevedo, Fernando; Duitama, Jorge; Guerrero, Alberto; Cajiao, Cesar; Mayor, Victor; Beebe, Stephen; Raatz, Bodo, 2019, "Replication Data for: Genetic mapping for agronomic traits in a MAGIC population of common bean (Phaseolus vulgaris L.) under drought conditions", https://doi.org/10.7910/DVN/JR4X4C, Harvard Dataverse, V1, UNF:6:9Mo09XULmZ19DQpPaR+Byw== [fileUNF]en
dcterms.issued2019-06-27
dcterms.languageen
dcterms.licenseCC-BY-4.0
dcterms.publisherInternational Center for Tropical Agricultureen
dcterms.subjectphaseolus vulgarisen
dcterms.subjectquantitative trait locien
dcterms.subjectbeansen
dcterms.subjectcommon beansen
dcterms.subjectgenomeen
dcterms.typeDataset

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