Long read sequencing and assembly of wild diploid relatives and cultivars in support of banana breeding programs

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cg.authorship.typesCGIAR and advanced research instituteen_US
cg.contributor.affiliationThe University of Queenslanden_US
cg.contributor.affiliationBayer Crop Science, USAen_US
cg.contributor.affiliationInternational Institute of Tropical Agricultureen_US
cg.contributor.affiliationKatholieke Universiteit Leuvenen_US
cg.contributor.crpRoots, Tubers and Bananasen_US
cg.contributor.donorBill & Melinda Gates Foundationen_US
cg.contributor.donorHort Innovation Australiaen_US
cg.contributor.donorCGIAR Trust Funden_US
cg.contributor.initiativeAccelerated Breedingen_US
cg.coverage.countryUnited Statesen_US
cg.coverage.countryGermanyen_US
cg.coverage.iso3166-alpha2USen_US
cg.coverage.iso3166-alpha2DEen_US
cg.coverage.regionACPen_US
cg.coverage.regionNorthern Americaen_US
cg.coverage.regionEuropeen_US
cg.coverage.regionWestern Europeen_US
cg.creator.identifierAllan Brown: 0000-0001-9907-6125en_US
cg.creator.identifierTrushar Shah: 0000-0002-0091-7981en_US
cg.creator.identifierBrigitte Uwimana: 0000-0001-7460-9001en_US
cg.creator.identifierRony Swennen: 0000-0002-5258-9043en_US
cg.howPublishedFormally Publisheden_US
cg.identifier.doihttps://doi.org/10.1101/2024.09.03.610537en_US
cg.identifier.iitathemeBIOMETRICSen_US
cg.identifier.iitathemeBIOTECH & PLANT BREEDINGen_US
cg.reviewStatusN/Aen_US
cg.subject.actionAreaGenetic Innovationen_US
cg.subject.iitaAGRONOMYen_US
cg.subject.iitaBANANAen_US
cg.subject.iitaFOOD SECURITYen_US
cg.subject.iitaPLANT BREEDINGen_US
cg.subject.iitaPLANT DISEASESen_US
cg.subject.iitaPLANT HEALTHen_US
cg.subject.iitaPLANT PRODUCTIONen_US
cg.subject.impactAreaNutrition, health and food securityen_US
cg.subject.impactPlatformNutrition, Health and Food Securityen_US
cg.subject.sdgSDG 2 - Zero hungeren_US
cg.volumebioRxiv preprinten_US
dc.contributor.authorChen, A.en_US
dc.contributor.authorZhou, X.en_US
dc.contributor.authorDecker, K.en_US
dc.contributor.authorHavecker, E.en_US
dc.contributor.authorDu, E.en_US
dc.contributor.authorBrown, A.en_US
dc.contributor.authorAitken, E.A.B.en_US
dc.contributor.authorShah, T.en_US
dc.contributor.authorUwimana, B.en_US
dc.contributor.authorHresko, C.en_US
dc.contributor.authorSwennen, R.en_US
dc.contributor.authorLowdon, R.F.en_US
dc.date.accessioned2024-09-19T11:22:55Zen_US
dc.date.available2024-09-19T11:22:55Zen_US
dc.identifier.urihttps://hdl.handle.net/10568/152297en_US
dc.titleLong read sequencing and assembly of wild diploid relatives and cultivars in support of banana breeding programsen_US
dcterms.abstractBanana is an important fruit and staple crop, which is vital for food and income security in developing countries. A genomics initiative was undertaken as part of the Global Alliance against TR4 (Tropical Race 4 of Fusarium Wilt of Banana) Alliance, with Bayer Crop Science, International Institute of Tropical Agriculture, and University of Queensland to collectively accelerate the breeding efforts in Eastern Africa. The goal of this project is to develop genomics resources to improve banana breeding, productivity, and quality traits amid a changing climate and shifting disease pressures for breeding. Here, we present the PacBio HiFi sequencing, assembly, and comparative analysis of seven genomes of wild and edible diploid banana accessions belonging to subspecies considered important progenitors to cultivated banana varieties and part of breeding programs. This banana genome resource will help power genome editing, a pangenome effort, and conventional breeding programs for germplasm improvement.en_US
dcterms.accessRightsOpen Accessen_US
dcterms.audienceScientistsen_US
dcterms.available2024-09-03en_US
dcterms.bibliographicCitationChen, A., Zhou, X., Decker, K., Havecker, E., Du, Z., Brown, A., ... & Lowdon, R. (2024). Long read sequencing and assembly of wild diploid relatives and cultivars in support of banana breeding programs. bioRxiv, 1-22.en_US
dcterms.descriptionOpen Access Articleen_US
dcterms.extent1-22en_US
dcterms.issued2024-09en_US
dcterms.languageenen_US
dcterms.licenseCC-BY-NC-ND-4.0en_US
dcterms.subjectbananasen_US
dcterms.subjectbreedingen_US
dcterms.subjectchromosomesen_US
dcterms.subjectgenomesen_US
dcterms.subjectmusa acuminataen_US
dcterms.subjectfusarium oxysporumen_US
dcterms.subjectfusarium wilten_US
dcterms.typePreprinten_US

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