Whole-genome resequencing reveals world-wide ancestry and adaptive introgression events of domesticated cattle in East Asia

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cg.authorship.typesCGIAR and developing country instituteen
cg.authorship.typesCGIAR and advanced research instituteen
cg.contributor.affiliationNorthwest A&F Universityen
cg.contributor.affiliationNorthwestern Polytechnical Universityen
cg.contributor.affiliationShaanxi Provincial Institute of Archaeology, Chinaen
cg.contributor.affiliationYunnan Universityen
cg.contributor.affiliationQinghai Universityen
cg.contributor.affiliationNingxia Universityen
cg.contributor.affiliationHenan Academy of Agriculture Science, Chinaen
cg.contributor.affiliationAnhui Academy of Agriculture Science, Chinaen
cg.contributor.affiliationNational Beef Cattle and Yak Industrial Technology System, Chinaen
cg.contributor.affiliationLanzhou Universityen
cg.contributor.affiliationChinese Academy of Sciencesen
cg.contributor.affiliationChinese Academy of Agricultural Sciencesen
cg.contributor.affiliationInternational Livestock Research Instituteen
cg.contributor.affiliationUniversity of Dublinen
cg.contributor.crpLivestocken
cg.coverage.regionAsiaen
cg.coverage.regionEastern Asiaen
cg.howPublishedFormally Publisheden
cg.identifier.doihttps://doi.org/10.1038/s41467-018-04737-0en
cg.isijournalISI Journalen
cg.issn2041-1723en
cg.issue1en
cg.journalNature Communicationsen
cg.reviewStatusPeer Reviewen
cg.subject.ilriANIMAL BREEDINGen
cg.subject.ilriCATTLEen
cg.subject.ilriGENETICSen
cg.subject.ilriINDIGENOUS BREEDSen
cg.subject.ilriLIVESTOCKen
cg.volume9en
dc.contributor.authorNingbo Chenen
dc.contributor.authorYudong Caien
dc.contributor.authorQiuming Chenen
dc.contributor.authorRan Lien
dc.contributor.authorKun Wangen
dc.contributor.authorYongzhen Huangen
dc.contributor.authorSongmei Huen
dc.contributor.authorShisheng Huangen
dc.contributor.authorHucai Zhangen
dc.contributor.authorZhuqing Zhengen
dc.contributor.authorWeining Songen
dc.contributor.authorZhijie Maen
dc.contributor.authorYun Maen
dc.contributor.authorRuihua Dangen
dc.contributor.authorZijing Zhangen
dc.contributor.authorLei Xuen
dc.contributor.authorYutang Jiaen
dc.contributor.authorShanzhai Liuen
dc.contributor.authorXiangpeng Yueen
dc.contributor.authorWeidong Dengen
dc.contributor.authorXiaoming Zhangen
dc.contributor.authorZhouyong Sunen
dc.contributor.authorXianyong Lanen
dc.contributor.authorHan Jianlinen
dc.contributor.authorHong Chenen
dc.contributor.authorBradley, D.G.en
dc.contributor.authorYu Jiangen
dc.contributor.authorChuzhao Leien
dc.date.accessioned2018-08-24T12:01:06Zen
dc.date.available2018-08-24T12:01:06Zen
dc.identifier.urihttps://hdl.handle.net/10568/96901
dc.titleWhole-genome resequencing reveals world-wide ancestry and adaptive introgression events of domesticated cattle in East Asiaen
dcterms.abstractCattle domestication and the complex histories of East Asian cattle breeds warrant further investigation. Through analysing the genomes of 49 modern breeds and eight East Asian ancient samples, worldwide cattle are consistently classified into five continental groups based on Y-chromosome haplotypes and autosomal variants. We find that East Asian cattle populations are mainly composed of three distinct ancestries, including an earlier East Asian taurine ancestry that reached China at least ~3.9 kya, a later introduced Eurasian taurine ancestry, and a novel Chinese indicine ancestry that diverged from Indian indicine approximately 36.6–49.6 kya. We also report historic introgression events that helped domestic cattle from southern China and the Tibetan Plateau achieve rapid adaptation by acquiring ~2.93% and ~1.22% of their genomes from banteng and yak, respectively. Our findings provide new insights into the evolutionary history of cattle and the importance of introgression in adaptation of cattle to new environmental challenges in East Asia.en
dcterms.accessRightsOpen Accessen
dcterms.audienceScientistsen
dcterms.available2018-06-14en
dcterms.bibliographicCitationNingbo Chen, Yudong Cai, Qiuming Chen, Ran Li, Kun Wang, Yongzhen Huang, Songmei Hu, Shisheng Huang, Hucai Zhang, Zhuqing Zheng, Weining Song, Zhijie Ma, Yun Ma, Ruihua Dang, Zijing Zhang, Lei Xu, Yutang Jia, Shanzhai Liu, Xiangpeng Yue, Weidong Deng, Xiaoming Zhang, Zhouyong Sun, Xianyong Lan, Han Jianlin, Hong Chen, Bradley, D.G.,Yu Jiang and Chuzhao Lei. 2018. Whole-genome resequencing reveals world-wide ancestry and adaptive introgression events of domesticated cattle in East Asia. Nature Communications 9 Article number:2337.en
dcterms.issued2018-06-14en
dcterms.languageenen
dcterms.licenseCC-BY-4.0en
dcterms.publisherSpringeren
dcterms.subjectanimal breedingen
dcterms.subjectcattleen
dcterms.subjectgenomesen
dcterms.typeJournal Articleen

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