Replication Data for: Genomic prediction of agronomic traits in common bean under environmental stress

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cg.authorship.typesCGIAR single centreen
cg.contributor.affiliationBioversity International and the International Center for Tropical Agricultureen
cg.contributor.affiliationETH Zürichen
cg.contributor.affiliationUniversity of Californiaen
cg.contributor.affiliationProgeny Breedingen
cg.contributor.donorBill & Melinda Gates Foundationen
cg.coverage.countryColombia
cg.coverage.iso3166-alpha2CO
cg.coverage.regionAmericas
cg.coverage.regionSouth America
cg.coverage.regionLatin America and the Caribbean
cg.creator.identifierJohan Steven Aparicio: 0000-0003-3580-5354en
cg.creator.identifierVictor Manuel Mayor: 0000-0002-7775-6872en
cg.creator.identifierDaniel Ariza-Suarez: 0000-0002-1871-3514en
cg.creator.identifierbodo raatz: 0000-0003-0556-0691en
cg.identifier.doihttps://doi.org/10.7910/dvn/xcd67uen
cg.placeColombiaen
cg.subject.alliancebiovciatBEANSen
cg.subject.alliancebiovciatPLANT BREEDINGen
cg.subject.ciatBEANSen
cg.subject.ciatPLANT BREEDINGen
dc.contributor.authorKeller, Beaten
dc.contributor.authorAriza-Suárez, Danielen
dc.contributor.authorHoz, Juan Fernando de laen
dc.contributor.authorAparicio, Johan Stevenen
dc.contributor.authorPortilla Benavides, Ana Elisabethen
dc.contributor.authorBuendia, Hector Fabioen
dc.contributor.authorMayor, Victor Manuelen
dc.contributor.authorStuder, Brunoen
dc.contributor.authorRaatz, Bodoen
dc.date.accessioned2020-03-30T00:10:06Zen
dc.date.available2020-03-30T00:10:06Zen
dc.identifier.urihttps://hdl.handle.net/10568/107888
dc.titleReplication Data for: Genomic prediction of agronomic traits in common bean under environmental stressen
dcterms.abstractThese datasets contain phenotypic and genotypic data of a panel of elite Andean breeding lines of common bean (Phaseolus vulgaris L.) from CIAT. This population has been tested in twelve yield trials carried out in Palmira and Darien (Colombia) between 2013 and 2018 to assess its performance under irrigated, drought and variable soil P conditions. These trials were laid out in the field with an alpha-lattice experimental design using two to three replicates, and a non-replicated trial in 2016. Meteorological data for these trials is also provided. Different agronomic traits were evaluated including Days to Flowering (DF), Days to Physiological Maturity (DPM), 100 seed weight (100SdW) and Yield (Yd). The agronomic performance of the population was modeled using linear mixed models with spatial correction. From these models, best linear unbiased estimators (BLUEs) and their corresponding standard errors (SE) were obtained. This population was genotyped by sequencing (GBS) using the ApeKI-based restriction digestion. The genotypic data is presented in a variant call format (VCF) file of 5,820 SNPs and 481 lines. The genotypic matrix was imputed using Beagle (v4.1). These datasets were used to test genomic prediction models on the panel in order to assess their prediction ability under different scenarios and parameter settings.en
dcterms.accessRightsOpen Access
dcterms.bibliographicCitationKeller, B.; Ariza-Suarez, D.; De la Hoz, J.; Aparicio, J.S.; Portilla Benavides, A.E.; Buendia, H.F.; Mayor, V.M.; Studer, B.; Raatz, B. (2020). Replication Data for: Genomic prediction of agronomic traits in common bean under environmental stress. https://doi.org/10.7910/DVN/XCD67U, Harvard Dataverse, V1, UNF:6:2ucpalum7jucY0dQs56Z3A== [fileUNF]en
dcterms.issued2020en
dcterms.languageen
dcterms.licenseCopyrighted; all rights reserved
dcterms.publisherInternational Center for Tropical Agricultureen
dcterms.subjectgenomic selectionen
dcterms.subjectplant breedingen
dcterms.subjectdroughten
dcterms.subjectphosphorusen
dcterms.subjectbeansen
dcterms.subjectfósforoen
dcterms.subjectmejoramiento de plantasen
dcterms.subjectsequíaen
dcterms.subjectselección asistida por marcadoresen
dcterms.subjectfrijolen
dcterms.subjectagrobiodiversityen
dcterms.subjectagrobiodiversidaden
dcterms.typeDataset

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