GnpIS-Ephesis, the phenotypic data integration platform for INRA networks experimental data – data discovery and dataset building use cases

Simple item page
cg.authorship.typesCGIAR and advanced research instituteen_US
cg.contributor.affiliationInstitut National de la Recherche Agronomique, Franceen_US
cg.contributor.affiliationBioversity Internationalen_US
cg.contributor.crpWater, Land and Ecosystemsen_US
cg.creator.identifierElizabeth Arnaud: 0000-0002-6020-5919en_US
cg.identifier.urlhttps://pag.confex.com/pag/xxiv/webprogram/Paper19855.htmlen_US
cg.subject.bioversityINFORMATION SYSTEMSen_US
cg.subject.bioversityPHENOTYPESen_US
cg.subject.bioversityDATAen_US
dc.contributor.authorPommier, C.en_US
dc.contributor.authorAlaux, M.en_US
dc.contributor.authorLetellier, T.en_US
dc.contributor.authorMichotey, Céliaen_US
dc.contributor.authorCornut, Guillaumeen_US
dc.contributor.authorLebreton, A.en_US
dc.contributor.authorLabernadiere, M.en_US
dc.contributor.authorLaine, M.en_US
dc.contributor.authorArnaud, Elizabethen_US
dc.contributor.authorAdam-Blondon, Anne-Françoiseen_US
dc.contributor.authorQuesneville, H.en_US
dc.date.accessioned2017-01-16T13:18:02Zen_US
dc.date.available2017-01-16T13:18:02Zen_US
dc.identifier.urihttps://hdl.handle.net/10568/78780en_US
dc.titleGnpIS-Ephesis, the phenotypic data integration platform for INRA networks experimental data – data discovery and dataset building use casesen_US
dcterms.abstractPhenotype data are collected in trials conducted by experimental facilities including multilocal field networks and high throughput phenotyping facilities in controlled environments or fields. A given germplasm panel can therefore have been phenotyped in very different conditions and using very different protocols. As a result, a collection of phenotype datasets is usually highly heterogeneous and hard to integrate. GnpIS is an integrative information system dedicated to plant and their pathogens. The integration of heterogeneous phenotypic datasets implies identifying common pivot resources like germplasm, observation variables following the Cropontology model, experimental locations and years. GnpIS allows performing data discovery on those data, which can lead to datasets building through the GnpIS-Ephesis application. GnpIS-Ephesis allows creating datasets to study the relations between yield, including its components, stress and disease tolerance from public provided by the INRA Wheat Network Phenotypic. It includes fifteen years of observations on eleven experimental sites. Those study datasets can be narrowed from a maximum number of observations on several years and locations to a minimal dataset on comparable locations/years pairs to reduce the environmental variability. This variability can be evaluated thanks to reference germplasms. Quercus, Populus or Vitis public data available in GnpIS-Ephesis allows to study adaptation to climate change. For instance, a dataset including phenology variables like budbreak or flowering can be extracted and used as input for statistical analysis tools or model to evaluate adaptability of several hundreds of vitis variety.en_US
dcterms.accessRightsOpen Accessen_US
dcterms.bibliographicCitationPommier, C.; Alaux, M.; Letellier, T.; Michotey, C.; Cornut, G.; Lebreton, A.; Labernadiere, M.; Laine, M.; Arnaud, E.; Adam-Blondon, A-F.; Quesneville, H. (2016) GnpIS-Ephesis, the phenotypic data integration platform for INRA networks experimental data – data discovery and dataset building use cases. [Abstract] presented at: XXIV Plant and Animal Genome Conference. San Diego, CA (USA) 9-13 Jan 2016.en_US
dcterms.issued2016en_US
dcterms.languageenen_US
dcterms.subjectinformation systemsen_US
dcterms.subjectplantsen_US
dcterms.subjectphenotypesen_US
dcterms.subjectdataen_US
dcterms.typeConference Paperen_US

Files

License bundle

Now showing 1 - 1 of 1
Thumbnail Image
Name:
license.txt
Size:
1.87 KB
Format:
Item-specific license agreed upon to submission
Description:
Download

Collections

Bioversity Conference Papers
Effective Genetic Resources Conservation and Use
WLE Communication Materials