Reciprocal adaptation of rice and Xanthomonas oryzae pv. oryzae: cross-species 2D GWAS reveals the underlying genetics

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cg.contributor.affiliationChinese Academy of Agricultural Sciencesen
cg.contributor.affiliationAnhui Agricultural Universityen
cg.contributor.affiliationUniversity of Californiaen
cg.contributor.affiliationNorth China University of Science and Technologyen
cg.contributor.affiliationInternational Rice Research Instituteen
cg.identifier.doihttps://doi.org/10.1093/plcell/koab146en
cg.issn1040-4651en
cg.issue8en
cg.journalThe Plant Cellen
cg.volume33en
dc.contributor.authorZhang, Fanen
dc.contributor.authorHu, Zhiqiangen
dc.contributor.authorWu, Zhichaoen
dc.contributor.authorLu, Jialingen
dc.contributor.authorShi, Yingyaoen
dc.contributor.authorXu, Jianlongen
dc.contributor.authorWang, Xiyinen
dc.contributor.authorWang, Jinpengen
dc.contributor.authorWang, Mingmingen
dc.contributor.authorShi, Xiaorongen
dc.contributor.authorCui, Yanruen
dc.contributor.authorVera Cruz, Casianaen
dc.contributor.authorZhuo, Dalongen
dc.contributor.authorHu, Dandanen
dc.contributor.authorLi, Minen
dc.contributor.authorWang, Wenshengen
dc.contributor.authorZhao, Xiuqinen
dc.contributor.authorZheng, Tianqingen
dc.contributor.authorFu, Binyingen
dc.contributor.authorAli, Jauharen
dc.contributor.authorZhou, Yonglien
dc.contributor.authorLi, Zhikangen
dc.date.accessioned2024-12-19T12:53:39Zen
dc.date.available2024-12-19T12:53:39Zen
dc.identifier.urihttps://hdl.handle.net/10568/164257
dc.titleReciprocal adaptation of rice and Xanthomonas oryzae pv. oryzae: cross-species 2D GWAS reveals the underlying geneticsen
dcterms.abstractA 1D/2D genome-wide association study strategy was adopted to investigate the genetic systems underlying the reciprocal adaptation of rice (Oryza sativa) and its bacterial pathogen, Xanthomonas oryzae pv. oryzae (Xoo) using the whole-genome sequencing and large-scale phenotyping data of 701 rice accessions and 23 diverse Xoo strains. Forty-seven Xoo virulence-related genes and 318 rice quantitative resistance genes (QR-genes) mainly located in 41 genomic regions, and genome-wide interactions between the detected virulence-related genes and QR genes were identified, including well-known resistance genes/virulence genes plus many previously uncharacterized ones. The relationship between rice and Xoo was characterized by strong differentiation among Xoo races corresponding to the subspecific differentiation of rice, by strong shifts toward increased resistance/virulence of rice/Xoo populations and by rich genetic diversity at the detected rice QR-genes and Xoo virulence genes, and by genome-wide interactions between many rice QR-genes and Xoo virulence genes in a multiple-to-multiple manner, presumably resulting either from direct protein–protein interactions or from genetic epistasis. The observed complex genetic interaction system between rice and Xoo likely exists in other crop–pathogen systems that would maintain high levels of diversity at their QR-loci/virulence-loci, resulting in dynamic coevolutionary consequences during their reciprocal adaptation.en
dcterms.accessRightsOpen Access
dcterms.available2021-06-02
dcterms.bibliographicCitationZhang, Fan; Hu, Zhiqiang; Wu, Zhichao; Lu, Jialing; Shi, Yingyao; Xu, Jianlong; Wang, Xiyin; Wang, Jinpeng; Zhang, Fan; Wang, Mingming; Shi, Xiaorong; Cui, Yanru; Vera Cruz, Casiana; Zhuo, Dalong; Hu, Dandan; Li, Min; Wang, Wensheng; Zhao, Xiuqin; Zheng, Tianqing; Fu, Binying; Ali, Jauhar; Zhou, Yongli and Li, Zhikang. 2021. Reciprocal adaptation of rice and Xanthomonas oryzae pv. oryzae: cross-species 2D GWAS reveals the underlying genetics. The Plant Cell, Volume 33 no. 8 p. 2538-2561en
dcterms.extentpp. 2538-2561en
dcterms.issued2021-08-31
dcterms.languageen
dcterms.licenseCC-BY-4.0
dcterms.publisherOxford University Pressen
dcterms.subjectcell biologyen
dcterms.subjectplant scienceen
dcterms.typeJournal Article

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