Applying FAIR Principles to plant phenotypic data management in GnpIS

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cg.authorship.typesCGIAR and advanced research instituteen
cg.contributor.affiliationAmélioration Génétique et Adaptation des Plantes Méditerranéennes et Tropicalesen
cg.contributor.affiliationInstitut National de la Recherche Agronomique, Franceen
cg.contributor.affiliationUniversity of Strasbourgen
cg.contributor.affiliationBioversity Internationalen
cg.contributor.crpBig Data
cg.creator.identifierElizabeth Arnaud: 0000-0002-6020-5919en
cg.creator.identifierMarie-Angélique Laporte: 0000-0002-8461-9745en
cg.creator.identifierRicardo Flores: 0000-0002-3033-5077en
cg.identifier.doihttps://doi.org/10.34133/2019/1671403en
cg.issn2643-6515en
cg.journalPlant Phenomicsen
cg.reviewStatusPeer Reviewen
cg.subject.bioversityDATAen
cg.subject.bioversityOPEN DATAen
cg.subject.bioversitySTANDARDSen
cg.subject.bioversityINTEROPERABILITYen
cg.volume2019en
dc.contributor.authorPommier, C.en
dc.contributor.authorMichotey, Céliaen
dc.contributor.authorCornut, Guillaumeen
dc.contributor.authorRoumet, P.en
dc.contributor.authorDuchêne, E.en
dc.contributor.authorFlores, R.en
dc.contributor.authorLebreton, A.en
dc.contributor.authorAlaux, M.en
dc.contributor.authorDurand, S.en
dc.contributor.authorKimmel, E.en
dc.contributor.authorLetellier, T.en
dc.contributor.authorMerceron, G.en
dc.contributor.authorLaine, M.en
dc.contributor.authorGuerche, C.en
dc.contributor.authorLoaec, M.en
dc.contributor.authorSteinbach, D.en
dc.contributor.authorLaporte, Marie-Angéliqueen
dc.contributor.authorArnaud, Elizabethen
dc.contributor.authorQuesneville, H.en
dc.contributor.authorAdam-Blondon, Anne-Françoiseen
dc.date.accessioned2019-05-30T14:05:46Zen
dc.date.available2019-05-30T14:05:46Zen
dc.identifier.urihttps://hdl.handle.net/10568/101440
dc.titleApplying FAIR Principles to plant phenotypic data management in GnpISen
dcterms.abstractGnpIS is a data repository for plant phenomics that stores whole field and greenhouse experimental data including environment measures. It allows long-term access to datasets following the FAIR principles: Findable, Accessible, Interoperable, and Reusable, by using a flexible and original approach. It is based on a generic and ontology driven data model and an innovative software architecture that uncouples data integration, storage, and querying. It takes advantage of international standards including the Crop Ontology, MIAPPE, and the Breeding API. GnpIS allows handling data for a wide range of species and experiment types, including multiannual perennial plants experimental network or annual plant trials with either raw data, i.e., direct measures, or computed traits. It also ensures the integration and the interoperability among phenotyping datasets and with genotyping data. This is achieved through a careful curation and annotation of the key resources conducted in close collaboration with the communities providing data. Our repository follows the Open Science data publication principles by ensuring citability of each dataset. Finally, GnpIS compliance with international standards enables its interoperability with other data repositories hence allowing data links between phenotype and other data types. GnpIS can therefore contribute to emerging international federations of information systems.en
dcterms.accessRightsOpen Access
dcterms.available2019-04-30en
dcterms.bibliographicCitationPommier, C.; Michotey, C.; Cornut, G.; Roumet, P.; Duchêne, E., Flores, R.; Lebreton, A.; Alaux, M.; Durand, S.; Kimmel, E.; Letellier, T.; Merceron, G.; Laine, M.; Guerche, C.; Loaec, M.; Steinbach, D.; Laporte, M-A.; Arnaud, E.; Quesneville, H.; Adam-Blondon, A.F. (2019) Applying FAIR Principles to plant phenotypic data management in GnpIS. Plant Phenomics, vol. 2019, Article ID 1671403. ISSN: 2643-6515.en
dcterms.issued2019-01en
dcterms.languageen
dcterms.licenseCC-BY-4.0
dcterms.publisherAmerican Association for the Advancement of Scienceen
dcterms.subjectdatabasesen
dcterms.subjectdataen
dcterms.subjectopen dataen
dcterms.subjectstandardsen
dcterms.subjectintegrationen
dcterms.subjectinteroperabilityen
dcterms.typeJournal Article

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