RNAseq of diverse spring wheat cultivars released during last 110 years

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cg.contributor.affiliationChinese Academy of Agricultural Sciencesen_US
cg.contributor.affiliationInternational Maize and Wheat Improvement Centeren_US
cg.contributor.affiliationQuaid-i-Azam Universityen_US
cg.contributor.affiliationNational Agriculture Research Centeren_US
cg.contributor.affiliationCOMSATS Universityen_US
cg.contributor.affiliationNanfan Research Instituteen_US
cg.contributor.donorNational Science Foundation of Chinaen_US
cg.contributor.donorChinese Academy of Agricultural Sciencesen_US
cg.contributor.donorCGIAR Trust Funden_US
cg.contributor.initiativeBreeding Resourcesen_US
cg.contributor.initiativeDigital Innovationen_US
cg.creator.identifierawais rasheed: 0000-0003-2528-708Xen_US
cg.creator.identifierHuihui Li: 0000-0002-9117-5011en_US
cg.howPublishedFormally Publisheden_US
cg.identifier.doihttps://doi.org/10.1038/s41597-023-02769-wen_US
cg.isijournalISI Journalen_US
cg.issn2052-4463en_US
cg.issue1en_US
cg.journalScientific Dataen_US
cg.reviewStatusPeer Reviewen_US
cg.subject.actionAreaGenetic Innovationen_US
cg.subject.impactAreaClimate adaptation and mitigationen_US
cg.volume10en_US
dc.contributor.authorMaqbool, Samanen_US
dc.contributor.authorNaseer, Samaren_US
dc.contributor.authorZahra, Nageenen_US
dc.contributor.authorRasool, Fatimaen_US
dc.contributor.authorQayyum, Humairaen_US
dc.contributor.authorMajeed, Khawaren_US
dc.contributor.authorJahanzaib, Muhammaden_US
dc.contributor.authorSajjad, Muhammaden_US
dc.contributor.authorFayyaz, Muhammaden_US
dc.contributor.authorKashif Naeem, Muhammaden_US
dc.contributor.authorRamzan Khan, Muhammaden_US
dc.contributor.authorZhang, Haoen_US
dc.contributor.authorRasheed, Awaisen_US
dc.contributor.authorLi, Huihuien_US
dc.date.accessioned2024-02-29T15:16:14Zen_US
dc.date.available2024-02-29T15:16:14Zen_US
dc.identifier.urihttps://hdl.handle.net/10568/139765en_US
dc.titleRNAseq of diverse spring wheat cultivars released during last 110 yearsen_US
dcterms.abstractHere, we performed RNA-seq based expression analysis of root and leaf tissues of a set of 24 historical spring wheat cultivars representing 110 years of temporal genetic variations. This huge 130 tissues RNAseq dataset was initially used to study expression pattern of 97 genes regulating root growth and development in wheat. Root system architecture (RSA) is an important target for breeding stress-resilient and high-yielding wheat cultivars under climatic fluctuations. However, root transcriptome analysis is usually obscured due to challenges in root research due to their below ground presence. We also validated the dataset by performing correlation analysis between expression of RSA related genes in roots and leaves with 25 root traits analyzed under varying moisture conditions and 10 yield-related traits. The Pearson’s correlation coefficients between root phenotypes and expression of root-specific genes varied from −0.72 to 0.78, and strong correlations with genes such as DRO1, TaMOR, ARF4, PIN1 was observed. The presented datasets have multiple uses such as a) studying the change in expression pattern of genes during time, b) differential expression of genes in two very important tissues of wheat i.e., leaf and roots, and c) studying customized expression of genes associated with important phenotypes in diverse wheat cultivars. The initial findings presented here provided key insights into understanding the transcriptomic basis of phenotypic variability of RSA in wheat cultivars.en_US
dcterms.accessRightsOpen Accessen_US
dcterms.available2023-12-08en_US
dcterms.bibliographicCitationMaqbool, S., Naseer, S., Zahra, N., Rasool, F., Qayyum, H., Majeed, K., Jahanzaib, M., Sajjad, M., Fayyaz, M., Naeem, M. K., Khan, M. R., Zhang, H., Rasheed, A., & Li, H. (2023). RNAseq of diverse spring wheat cultivars released during last 110 years. Scientific Data, 10(1). https://doi.org/10.1038/s41597-023-02769-wen_US
dcterms.issued2023en_US
dcterms.languageenen_US
dcterms.licenseCC-BY-4.0en_US
dcterms.publisherNature Publishing Groupen_US
dcterms.subjectRNA sequenceen_US
dcterms.subjectspring wheaten_US
dcterms.subjectroot architectureen_US
dcterms.subjectgenesen_US
dcterms.typeJournal Articleen_US

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